GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| BLCA | cis | rs12220238 | 1 | rs11000888 | chr10:75901929 | ADK | chr10:75910965-76469059:+ | 0.3 | 4.72 | 3.36E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs11000890 | chr10:75904073 | ADK | chr10:75910965-76469059:+ | 0.3 | 4.64 | 4.77E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs11000894 | chr10:75906598 | ADK | chr10:75910965-76469059:+ | 0.3 | 4.53 | 7.84E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs11000897 | chr10:75911276 | ADK | chr10:75910965-76469059:+ | 0.29 | 4.39 | 1.46E-5 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs11000900 | chr10:75918440 | ADK | chr10:75910965-76469059:+ | 0.28 | 4.25 | 2.74E-5 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs11000901 | chr10:75919971 | ADK | chr10:75910965-76469059:+ | 0.3 | 4.54 | 7.44E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs11000901 | chr10:75919971 | AP3M1 | chr10:75880016-75910826:- | 0.3 | 3.86 | 0.000131 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs11000902 | chr10:75920483 | ADK | chr10:75910965-76469059:+ | 0.33 | 4.8 | 2.33E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs11000902 | chr10:75920483 | AP3M1 | chr10:75880016-75910826:- | 0.33 | 4.14 | 4.34E-5 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs11000902 | chr10:75920483 | SAMD8 | chr10:76871393-76936607:+ | 0.26 | 3.86 | 0.000133 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs11000905 | chr10:75925532 | ADK | chr10:75910965-76469059:+ | 0.3 | 4.47 | 1.02E-5 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs11000909 | chr10:75944828 | ADK | chr10:75910965-76469059:+ | 0.3 | 4.5 | 9.11E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs11000912 | chr10:75948477 | ADK | chr10:75910965-76469059:+ | 0.31 | 4.63 | 5.07E-6 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs11000912 | chr10:75948477 | AP3M1 | chr10:75880016-75910826:- | 0.3 | 3.91 | 0.00011 | Soluble interleukin-2 receptor subunit alpha |
| BLCA | cis | rs12220238 | 1 | rs11000916 | chr10:75953909 | ADK | chr10:75910965-76469059:+ | 0.31 | 4.71 | 3.41E-6 | Soluble interleukin-2 receptor subunit alpha |